How to remove
Uninstall Cygwin
from Windows
Easily uninstall Cygwin from Windows 10 or 11 with our expert-tested guide. Remove unwanted programs quickly and efficiently. Fixed in minutes!
How does How to uninstall Cygwin on Windows OS end up on your PC?
- Cygwin does not have a standard uninstaller in the Control Panel
- Users may not know how to properly uninstall Cygwin
- Cygwin's shortcut cannot be unpinned from the Start menu
- Users may attempt to simply delete the Cygwin icon instead of uninstalling
- Supporting files remain after a simple removal, causing potential system slowdowns
Repairs Windows system files, removes malware, and restores a clean OS state — without reinstalling.
Hi! I recently decided to go from Windows x64 to the x86 version, and I can't get rid of the shortcut in Start menu; Clicking uninstall takes me to 'uninstall a program', but there is no Cygwin uninstaller, it needs to be done manually. Could you please explain how to uninstall Cygwin on Windows?
All help appreciated!
Cygwin by Red Hat is an open source collection of tools that allows Unix[ref en-1] or Linux[ref en-3] applications to be compiled and run on a Windows OS from within a Linux-like interface. Usually, it is installed by advanced computer users, but sometimes it happens that people install it without knowing the kinds of services it offers and its overall purpose.
From your perspective Sandr, it seems that you have installed Cygwin intentionally and has been satisfied with the tool until you have decided to uninstall it. Actually, we have replied to several users earlier who sought to find out how to uninstall Cygwin on Windows OS. We have checked what problems the users face in this case and found out that it sometimes is not that easy of a task.

You have asked how to remove Cygwin from your Start bar. Actually, this can usually be done by clicking on the shortcut and selecting 'Unpin From Start'. Unfortunately, we have found out that in the case of Cygwin it's not possible. Therefore, if you want to switch to the version x86,[ref en-2] you will have to uninstall Cygwin from your machine.
Don't forget that in order to do that completely, you will have to 'Uninstall' the application, not 'Remove'. In other words, make sure that you get rid of the main installer via the Control Panel and then find all supporting files for the same purpose. Of course, you can perform 'Removal', which refers to clicking on the icon and 'Delete' button; however, this way you can burden your machine and gradually slow it down.
Therefore, it's recommended to take your time for each software's removal and find the whole bunch of files that the program is related to. If you are not yet advanced in doing so, we will provide you a detailed guide down below. By the way, if you are not willing to uninstall Cygwin on Windows manually, you can employ [d1] for programs' removal.
How to uninstall Cygwin on Windows OS
You should start Cygwin uninstalling process from Control Panel. If you need detailed instructions on how to open it and how to uninstall programs from the folder, see the instructions below:
- Click Ctrl + Alt + Delete buttons simultaneously to open Task Manager.
- Stop X11 server if its running and terminate all programs related to Cygwin that might be running in the background.
- Type in Control Panel into the search box.
- Go to Programs > Uninstall a program.
- As soon as the list of installed programs unfolds, find Cygwin.
- Right-click on the program and pick Uninstall.
- Right after that, a pop-up window will show up asking whether you are sure to remove the program. If you are, then click the OK.

Uninstall cygwin on windows os use task manager and control panel
Uninstall Cygwin after permission was denied
Several users have reported to us that after clicking on 'Uninstall' button, they have got an error message saying permission denied.
In this case, you have to modify the permission and/or ownership of the files or folders that are causing this error. The easiest way is to change the ownership of all files and folders to your account. For that you have to:
- Boot into Safe Mode to access Security Tab.
- Click on the root Cygwin folder → Properties → Security tab.
- Select Advanced.
- Go to the Owner tab and set your account as the owner.
- Select Replace owner on sub-containers and objects check box and click OK.
After that, you should be able to uninstall Cygwin from Control Panel.
Modify Windows Registry
In order to eliminate the tool completely, you have to find all supporting files via Windows Registry Editor and remove each of them.
Be careful because this process is quite risky. You may come up with the wrong files and damage important programs. However, we are pretty sure that you will be very careful and successfully initiate the following steps:
- Press Windows key + R and type in regedit to enter Windows Registry Editor.
- Find one of the registry editors:
HKEY_CURRENT_USER_Software_Cygnus Solutions
HKEY_LOCAL_MACHINE_Software_Cygnus Solutions, etc. - Delete each of them by clicking on them and pressing a 'Delete' button.
- Open File explorer → View → untick Hidden items.
- Look for such folders:
(C:\\Program Files\\Cygwin)
(C:\\Document and Settings\\All Users\\Application Data\\Cygwin)
(C:\\Documents and Settings\\%USER%\\Application Data\\Cygwin) - If you find any of them, Delete each of them by clicking on them and pressing a Delete button.
- Close all programs and Restart your computer.

Uninstall cygwin on windows os use registry editor
Of course, manual uninstalling can be unsuccessful since you may bypass additional components without being noticed, so we recommend using [d1] instead.
Bottom line
To uninstall Cygwin, ensure you use the 'Uninstall' option in the Control Panel and manually remove all supporting files. If you encounter issues, consider seeking additional help or guides on the uninstallation process.
Frequently asked questions
To uninstall Cygwin on Windows 10, go to the Control Panel, select 'Programs and Features', find Cygwin in the list, and click 'Uninstall'. Make sure to also delete the Cygwin installation directory if you want to remove all associated files.
Yes, you can uninstall Cygwin on Windows 11 by accessing 'Settings', then 'Apps', and selecting 'Apps & features' to find Cygwin and click 'Uninstall'.
Uninstalling Cygwin should not affect other programs on your Windows system, but any scripts or applications that rely on Cygwin may stop working.




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